Automatic segmentation in CMR - Development and validation of algorithms for left ventricular function, myocardium at risk and myocardial infarction

In this thesis four new algorithms are presented for automatic segmentation in cardiovascular magnetic resonance (CMR); automatic segmentation of the left ventricle, myocardial infarction, and myocardium at risk in two different image types. All four algorithms were implemented in freely available software for image analysis and were validated against reference delineations with a low bias and high regional agreement. CMR is the most accurate and reproducible method for assessment of left ventricular mass and volumes and reference standard for assessment of myocardial infarction. CMR is also validated against single photon emission computed tomography (SPECT) for assessment of myocardium at risk up to one week after acute myocardial infarction. However, the clinical standard for quantification of left ventricular mass and volumes is manual delineation which has been shown to have a large bias between observers from different sites and for myocardium at risk and myocardial infarction there is no clinical standard due to varying results shown for the previously suggested threshold methods. The new automatic algorithms were all based on intensity classification by Expectation Maximization (EM) and incorporation of a priori information specific for each application. Validation was performed in large cohorts of patients with regards to bias in clinical parameters and regional agreement as Dice Similarity Coefficient (DSC). Further, images with reference delineation of the left ventricle were made available for future benchmarking of left ventricular segmentation, and the new automatic algorithms for segmentation of myocardium at risk and myocardial infarction were directly compared to the previously suggested intensity threshold methods. Combining intensity classification by EM with a priori information as in the new automatic algorithms was shown superior to previous methods and specifically to the previously suggested threshold methods for myocardium at risk and myocardial infarction. Added value of using a priori information and intensity correction was shown significant measured by DSC even though not significant for bias. For the previously suggested methods of infarct quantification a poorer result was found in the new multi-center, multi-vendor patient data than in the original validation in animal studies or single center patient studies. Thus, the results in this thesis also show the importance ofusing both bias and DSC for validation and performing validation in images of representative quality as in multi-center, multi-vendor patient studies

Validation and Development of a New Automatic Algorithm for Time-Resolved Segmentation of the Left Ventricle in Magnetic Resonance Imaging

Introduction. Manual delineation of the left ventricle is clinical standard for quantification of cardiovascular magnetic resonance images despite being time consuming and observer dependent. Previous automatic methods generally do not account for one major contributor to stroke volume, the long-axis motion. Therefore, the aim of this study was to develop and validate an automatic algorithm for time-resolved segmentation covering the whole left ventricle, including basal slices affected by long-axis motion. Methods. Ninety subjects imaged with a cine balanced steady state free precession sequence were included in the study (training set n=40, test set n=50). Manual delineation was reference standard and second observer analysis was performed in a subset (n=25). The automatic algorithm uses deformable model with expectation-maximization, followed by automatic removal of papillary muscles and detection of the outflow tract. Results. The mean differences between automatic segmentation and manual delineation were EDV −11 mL, ESV 1 mL, EF −3%, and LVM 4 g in the test set. Conclusions. The automatic LV segmentation algorithm reached accuracy comparable to interobserver for manual delineation, thereby bringing automatic segmentation one step closer to clinical routine. The algorithm and all images with manual delineations are available for benchmarking

Aspects of Left Ventricular Morphology Outperform Left Ventricular Mass for Prediction of QRS Duration

Methods: The study population of healthy adult volunteers was divided into a sample for development of a prediction model (n = 63) and a testing sample (n = 30). Magnetic resonance imaging data were used to assess anatomical characteristics of the left ventricle: the angle between papillary muscles (PMA), the length of the left ventricle (LVL) and left ventricular mass (LVM). Twelve-lead electrocardiogram (ECG) was used for measurement of the QRS duration. Multiple linear regression analysis was used to develop a prediction model to estimate the QRS duration. The accuracy of the prediction model was assessed by comparing predicted with measured QRS duration in the test set. Results: The angle between PMA and the length of the LVL were statistically significant predictors of QRS duration. Correlation between QRS duration and PMA and LVL was r = 0.57, P = 0.0001 and r = 0.45, P = 0.0002, respectively. The final model for prediction of the QRS was: QRS(Predicted) = 97 + (0.35 x LVL) - (0.45 x PMA). The predicted and real QRS duration differed with median 1 ms. Conclusions: The model for prediction of QRS duration opens the ability to predict case-specific normal QRS duration. This knowledge can have clinical importance, when determining the normality on case-specific basis. Ann Noninvasive Electrocardiol 2010;15(2):124-129